| | episode | air date | countdown | title |
| S05E13 | 2016-06-21 | | return 0 | |
| S05E12 | 2016-06-14 | | .exe | |
| S05E11 | 2016-06-07 | | Synecdoche | |
| S05E10 | 2016-05-31 | | The Day the World Went Away | |
| S05E09 | 2016-05-30 | | Sotto Voce | |
| S05E08 | 2016-05-24 | | Reassortment | |
| S05E07 | 2016-05-24 | | QSO | |
| S05E06 | 2016-05-23 | | A More Perfect Union | |
| S05E05 | 2016-05-17 | | ShotSeeker | |
| S05E04 | 2016-05-16 | | 6,741 | |
| S05E03 | 2016-05-10 | | Truth Be Told | |
| S05E02 | 2016-05-09 | | SNAFU | |
| S05E01 | 2016-05-03 | | B.S.O.D. | |
| | | | S04E22 | 2015-05-05 | | YHWH | |
| S04E21 | 2015-04-28 | | Asylum | |
| S04E20 | 2015-04-14 | | Terra Incognita | |
| S04E19 | 2015-04-07 | | Search and Destroy | |
| S04E18 | 2015-03-24 | | Skip | |
| S04E17 | 2015-03-10 | | Karma | |
| S04E16 | 2015-02-24 | | Blunt | |
| S04E15 | 2015-02-17 | | Q&A | |
| S04E14 | 2015-02-10 | | Guilty | |
| S04E13 | 2015-02-03 | | M.I.A. | |
| S04E12 | 2015-01-13 | | Control-Alt-Delete | |
| S04E11 | 2015-01-06 | | If-Then-Else | |
| S04E10 | 2014-12-16 | | The Cold War | |
| S04E09 | 2014-11-25 | | The Devil You Know | |
| S04E08 | 2014-11-18 | | Point of Origin | |
| S04E07 | 2014-11-11 | | Honor Among Thieves | |
| S04E06 | 2014-10-28 | | Pretenders | |
| S04E05 | 2014-10-21 | | Prophets | |
| S04E04 | 2014-10-14 | | Brotherhood | |
| S04E03 | 2014-10-07 | | Wingman | |
| S04E02 | 2014-09-30 | | Nautilus | |
| S04E01 | 2014-09-23 | | Panopticon | |
| | | | S03E23 | 2014-05-13 | | Deus Ex Machina | |
| S03E22 | 2014-05-06 | | A House Divided | |
| S03E21 | 2014-04-29 | | Beta | |
| S03E20 | 2014-04-15 | | Death Benefit | |
| S03E19 | 2014-04-01 | | Most Likely To ... | |
| S03E18 | 2014-03-25 | | Allegiance | |
| S03E17 | 2014-03-18 | | / | |
| S03E16 | 2014-03-04 | | RAM | |
| S03E15 | 2014-02-25 | | Last Call | |
| S03E14 | 2014-02-04 | | Provenance | |
| S03E13 | 2014-01-14 | | 4C | |
| S03E12 | 2014-01-07 | | Aletheia | |
| S03E11 | 2013-12-17 | | Lethe | |
| S03E10 | 2013-11-26 | | The Devil's Share | |
| S03E09 | 2013-11-19 | | The Crossing | |
| S03E08 | 2013-11-12 | | Endgame | |
| S03E07 | 2013-11-05 | | The Perfect Mark | |
| S03E06 | 2013-10-29 | | Mors Praematura | |
| S03E05 | 2013-10-22 | | Razgovor | |
| S03E04 | 2013-10-15 | | Reasonable Doubt | |
| S03E03 | 2013-10-08 | | Lady Killer | |
| S03E02 | 2013-10-01 | | Nothing to Hide | |
| S03E01 | 2013-09-24 | | Liberty | |
| | | S02E22 | 2013-05-09 | | God Mode | |
| S02E21 | 2013-05-02 | | Zero Day | |
| S02E20 | 2013-04-25 | | In Extremis | |
| S02E19 | 2013-04-04 | | Trojan Horse | |
| S02E18 | 2013-03-14 | | All In | |
| S02E17 | 2013-03-07 | | Proteus | |
| S02E16 | 2013-02-21 | | Relevance | |
| S02E15 | 2013-02-14 | | Booked Solid | |
| S02E14 | 2013-02-07 | | One Percent | |
| S02E13 | 2013-01-31 | | Dead Reckoning | |
| S02E12 | 2013-01-10 | | Prisoner's Dilemma | |
| S02E11 | 2013-01-03 | | 2πR | |
| S02E10 | 2012-12-13 | | Shadow Box | |
| S02E09 | 2012-12-06 | | C.O.D. | |
| S02E08 | 2012-11-29 | | Til Death | |
| S02E07 | 2012-11-15 | | Critical | |
| S02E06 | 2012-11-08 | | The High Road | |
| S02E05 | 2012-11-01 | | Bury the Lede | |
| S02E04 | 2012-10-25 | | Triggerman | |
| S02E03 | 2012-10-18 | | Masquerade | |
| S02E02 | 2012-10-04 | | Bad Code | |
| S02E01 | 2012-09-27 | | The Contingency | |
| | | S01E23 | 2012-05-17 | | Firewall | |
| S01E22 | 2012-05-10 | | No Good Deed | |
| S01E21 | 2012-05-03 | | Many Happy Returns | |
| S01E20 | 2012-04-26 | | Matsya Nyaya | |
| S01E19 | 2012-04-05 | | Flesh and Blood | |
| S01E18 | 2012-03-29 | | Identity Crisis | |
| S01E17 | 2012-03-08 | | Baby Blue | |
| S01E16 | 2012-02-23 | | Risk | |
| S01E15 | 2012-02-16 | | Blue Code | |
| S01E14 | 2012-02-09 | | Wolf and Cub | |
| S01E13 | 2012-02-02 | | Root Cause | |
| S01E12 | 2012-01-19 | | Legacy | |
| S01E11 | 2012-01-12 | | Super | |
| S01E10 | 2011-12-15 | | Number Crunch | |
| S01E09 | 2011-12-08 | | Get Carter | |
| S01E08 | 2011-11-17 | | Foe | |
| S01E07 | 2011-11-03 | | Witness | |
| S01E06 | 2011-10-27 | | The Fix | |
| S01E05 | 2011-10-20 | | Judgement | |
| S01E04 | 2011-10-13 | | Cura Te Ipsum | |
| S01E03 | 2011-10-06 | | Mission Creep | |
| S01E02 | 2011-09-29 | | Ghosts | |
| S01E01 | 2011-09-22 | | Pilot | |
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